Added a note to man page about what happens to information that is
recorded in the private journal. Since it uses Branch.get, that
information will be copied when options allow. It seemed better to allow
it and document it than not allow it, since the options allow excluding
repositories and so can be used to exclude private repos if desired.

Not used yet, will be used by copy-branch to generate the list of files
to copy.

filterBranch should be reusable for copy-branch command.

Changed LogVariety to differentiate between LocationLog and UrlLog;
only location logs contain uuids and need to be filtered by uuid,
while url logs do not. This does not change current behavior,
but it will let filterBranch be reused without filtering url logs
incorrectly.

This oversight didn't cause any problems because the only place that
uses the information is dropDead, which handles Nothing the same as Just
OtherLog.

Avoiding problems with exporttree remotes in some unusual circumstances.

This commit was sponsored by Brett Eisenberg on Patreon.

This is conceptually very simple, just making a 1 that was hard coded be
exposed as a config option. The hard part was plumbing all that, and
dealing with complexities like reading it from git attributes at the
same time that numcopies is read.

Behavior change: When numcopies is set to 0, git-annex used to drop
content without requiring any copies. Now to get that (highly unsafe)
behavior, mincopies also needs to be set to 0. It seemed better to
remove that edge case, than complicate mincopies by ignoring it when
numcopies is 0.

This commit was sponsored by Denis Dzyubenko on Patreon.

My worry was that a preferred content expression that matches on metadata
would have removed the location log from cache, causing an expensive
re-read when a Seek action later checked the location log.

Especially when the --all optimisation in the previous commit
pre-cached the location log.

This also means that the --all optimisation could cache the metadata log
too, if it wanted too, but not currently done.

The cache is a list, with the most recently accessed file first. That
optimises it for the common case of reading the same file twice, eg a
get, examine, followed by set reads it twice. And sync --content reads the
location log 3 times in a row commonly.

But, as a list, it should not be made to be too long. I thought about
expanding it to 5 items, but that seemed unlikely to be a win commonly
enough to outweigh the extra time spent checking the cache.

Clearly there could be some further benchmarking and tuning here.

Using bytestring-filepath

Fix support for repositories tuned with annex.tune.branchhash1=true,
including --all not working and git-annex log not displaying anything for
annexed files.

Remove dup definitions and just use the RawFilePath one. </> etc are
enough faster that it's probably faster than building a String directly,
although I have not benchmarked.

git-annex find is now RawFilePath end to end, no string conversions.
So is git-annex get when it does not need to get anything.
So this is a major milestone on optimisation.

Benchmarks indicate around 30% speedup in both commands.

Probably many other performance improvements. All or nearly all places
where a file is statted use RawFilePath now.

Finally builds (oh the agoncy of making it build), but still very
unmergable, only Command.Find is included and lots of stuff is badly
hacked to make it compile.

Benchmarking vs master, this git-annex find is significantly faster!
Specifically:

	num files	old	new	speedup
	48500		4.77	3.73	28%
	12500		1.36	1.02	66%
	20		0.075	0.074	0% (so startup time is unchanged)

That's without really finishing the optimization. Things still to do:

* Eliminate all the fromRawFilePath, toRawFilePath, encodeBS,
  decodeBS conversions.
* Use versions of IO actions like getFileStatus that take a RawFilePath.
* Eliminate some Data.ByteString.Lazy.toStrict, which is a slow copy.
* Use ByteString for parsing git config to speed up startup.

It's likely several of those will speed up git-annex find further.
And other commands will certianly benefit even more.

This does not change the overall license of the git-annex program, which
was already AGPL due to a number of sources files being AGPL already.

Legally speaking, I'm adding a new license under which these files are
now available; I already released their current contents under the GPL
license. Now they're dual licensed GPL and AGPL. However, I intend
for all my future changes to these files to only be released under the
AGPL license, and I won't be tracking the dual licensing status, so I'm
simply changing the license statement to say it's AGPL.

(In some cases, others wrote parts of the code of a file and released it
under the GPL; but in all cases I have contributed a significant portion
of the code in each file and it's that code that is getting the AGPL
license; the GPL license of other contributors allows combining with
AGPL code.)

locationLogFileKey had an out of date list of toplevel log files to skip
over, and was only not broken because the other toplevel log files don't
look like keys. Fixed that too.

This log, unlike all other current top-level logs, is a new format log.

I have not checked what throwing it at the old log parser did, but it seems
likely it ignored unparsable lines, and so perhaps deleted all lines from
the log.

What these generate is not really suitable to be used as a filename,
which is why keyFile and fileKey further escape it. These are just
serializing Keys.

Also removed a quickcheck test that was very unlikely to test anything
useful, since it relied on random chance creating something that looks
like a serialized key. The other test is sufficient for testing what
that was intended to test anyway.

Had to refactor pure code into separate modules so it is accessible
inside Annex.Branch.Transitions.

This commit was sponsored by Peter on Patreon.

Actually very straightforward reuse of the metadata log file code.
Although I had to add a todo item as git-annex forget won't clean up
dead remote's metadata yet.

This would be worth adding to the external special remote interface
sometime. Have not opened a todo though, guess I'll wait until something
needs it.

This commit was supported by the NSF-funded DataLad project.

Incremental export updates work now too.

This commit was sponsored by Anthony DeRobertis on Patreon.

This commit was supported by the NSF-funded DataLad project.

Any config names can be set using this; git-annex commands will only look
at specific ones that make sense and are worth the overhead of querying the
branch.

This might also be useful for storing whatever other config-type stuff the
user might want to shove into the git-annex branch.

This commit was sponsored by Jochen Bartl on Patreon.

This is much more space efficient!

I hope this doesn't impact speed much -- it does have to pull out a value
from Annex state every time it accesses the branch now.

The test case I dropped has never caught any problems that I can remember,
and would have been rather difficult to convert.

* init: Repository tuning parameters can now be passed when initializing a
  repository for the first time. For details, see
  http://git-annex.branchable.com/tuning/
* merge: Refuse to merge changes from a git-annex branch of a repo
  that has been tuned in incompatable ways.

Found these with:
git grep "^  " $(find -type  f -name \*.hs) |grep -v ':  where'

Unfortunately there is some inline hamlet that cannot use tabs for
indentation.

Also, Assistant/WebApp/Bootstrap3.hs is a copy of a module and so I'm
leaving it as-is.

This fixes all instances of " \t" in the code base. Most common case
seems to be after a "where" line; probably vim copied the two space layout
of that line.

Done as a background task while listening to episode 2 of the Type Theory
podcast.

Slightly tricky as they are not normal UUIDBased logs, but are instead maps
from (uuid, chunksize) to chunkcount.

This commit was sponsored by Frank Thomas.

git-annex (5.20140717) unstable; urgency=high

  * Fix minor FD leak in journal code. Closes: #754608
  * direct: Fix handling of case where a work tree subdirectory cannot
    be written to due to permissions.
  * migrate: Avoid re-checksumming when migrating from hashE to hash backend.
  * uninit: Avoid failing final removal in some direct mode repositories
    due to file modes.
  * S3: Deal with AWS ACL configurations that do not allow creating or
    checking the location of a bucket, but only reading and writing content to
    it.
  * resolvemerge: New plumbing command that runs the automatic merge conflict
    resolver.
  * Deal with change in git 2.0 that made indirect mode merge conflict
    resolution leave behind old files.
  * sync: Fix git sync with local git remotes even when they don't have an
    annex.uuid set. (The assistant already did so.)
  * Set gcrypt-publish-participants when setting up a gcrypt repository,
    to avoid unncessary passphrase prompts.
    This is a security/usability tradeoff. To avoid exposing the gpg key
    ids who can decrypt the repository, users can unset
    gcrypt-publish-participants.
  * Install nautilus hooks even when ~/.local/share/nautilus/ does not yet
    exist, since it is not automatically created for Gnome 3 users.
  * Windows: Move .vbs files out of git\bin, to avoid that being in the
    PATH, which caused some weird breakage. (Thanks, divB)
  * Windows: Fix locking issue that prevented the webapp starting
    (since 5.20140707).

# imported from the archive

git-annex (5.20140412) unstable; urgency=high

  * Last release didn't quite fix the high cpu issue in all cases, this should.

# imported from the archive

git-annex (5.20140402) unstable; urgency=medium

  * unannex, uninit: Avoid committing after every file is unannexed,
    for massive speedup.
  * --notify-finish switch will cause desktop notifications after each
    file upload/download/drop completes
    (using the dbus Desktop Notifications Specification)
  * --notify-start switch will show desktop notifications when each
    file upload/download starts.
  * webapp: Automatically install Nautilus integration scripts
    to get and drop files.
  * tahoe: Pass -d parameter before subcommand; putting it after
    the subcommand no longer works with tahoe-lafs version 1.10.
    (Thanks, Alberto Berti)
  * forget --drop-dead: Avoid removing the dead remote from the trust.log,
    so that if git remotes for it still exist anywhere, git annex info
    will still know it's dead and not show it.
  * git-annex-shell: Make configlist automatically initialize
    a remote git repository, as long as a git-annex branch has
    been pushed to it, to simplify setup of remote git repositories,
    including via gitolite.
  * add --include-dotfiles: New option, perhaps useful for backups.
  * Version 5.20140227 broke creation of glacier repositories,
    not including the datacenter and vault in their configuration.
    This bug is fixed, but glacier repositories set up with the broken
    version of git-annex need to have the datacenter and vault set
    in order to be usable. This can be done using git annex enableremote
    to add the missing settings. For details, see
    http://git-annex.branchable.com/bugs/problems_with_glacier/
  * Added required content configuration.
  * assistant: Improve ssh authorized keys line generated in local pairing
    or for a remote ssh server to set environment variables in an
    alternative way that works with the non-POSIX fish shell, as well
    as POSIX shells.

# imported from the archive

git-annex (5.20140320~bpo70+1) wheezy-backports; urgency=medium

  * Updating backport to newest release.
  * Note that this backport does not feature constant time webapp auth token
    comparisons. It's not recommended to use the webapp on multiuser systems,
    since another use may be able to use a timing attack to guess its auth
    token. If you need that, it should not be hard to backport
    haskell-securemem.

# imported from the archive

UUIDBased is just a MapLog with a UUID for the field.